News, page updates and bug fixes
When we make changes to the model, fix bugs, or we just want to share something cool with everyone, you'll see it here. If you are going to present work with these models at a conference, or if you publish a paper, send us an email and we'll be happy to post it.
September 29th, 2009 A bug was identified and fixed: When using a CA model and uploading your own contact file, incorrect values were used for the excluded volume. All other combinations of models and contacts were unaffected.
September 28th/29th, 2009 Temporary issue with contact map calculations resulted in all generated files using a cut-off contact map with all-atom representation. If you calculated a .top and .gro file on these two days, double check your files.
August 24th/25th, 2009 Web page intermittently unavailable due to unexpected server issues. Functionality restored.
August 10th, 2009 A precision issue was fixed. For shadow contact calculations, we now use precision of 0.01 Angstroms for coordinates. For technical reasons, we still use 0.001 A precision for coordinates when calculating cut-off contact maps. This difference will be resolved soon.
January 21st, 2009 Our initial all-atom paper on RNA appears in Biophysical Journal.
January 20th, 2009 C-alpha model for proteins added to the webtool and tutorial.
November, 2008 "Shadow" contact analysis webtool for monomeric, and oligomeric, protein/RNA/DNA systems is released.
October, 2008 All-atom structure-based webtool for proteins, RNA and DNA is released.
September 2nd, 2008 Our initial all-atom paper on proteins is published online in Proteins: Structure, Function Bioinformatics.
Please direct questions and comments to sbm-help@ctbp.ucsd.edu.
Page created and maintained by Jeff Noel and Paul Whitford